Sentence examples for based on codon position from inspiring English sources

The data were partitioned based on codon position in the alignment.

Phylogenetic analysis of msp1 sequences was performed by maximum likelihood using RAxML v. 8.1.6, with data partitioned in three sets, based on codon position.

Selection of the best-fit nucleotide substitution models was based on codon position using the Akaike Information Criterion in jmodeltest 2.0 [ 40, 41].

Two different partitioning schemes were used for each protein-coding gene/cluster: a) 1-partition with 1st, 2nd and 3rd codon positions assigned different weights as described above and b) equal-weighted 3-partitions based on codon position, with RY coding of 3rd codon positions.

The dataset was partitioned based on codon positions and each position was assumed to evolve under an independent GTR + Gamma model of sequence evolution.

For the other genes, previous studies [e.g. [ 56, 57, 61]] identified best-fitting models and used comparisons of Bayes factors [ 71, 72] to show that partitions based on codon positions are supported for all protein-coding loci.

Based on codon usage data for the 5892 genes in the PA14 genome, 74.7%% of positions within coding DNA are non-synonymous positions.

The tested partitions were based on the different genes and on codon positions for the coding genes of the dataset.

As a control, we also analyzed the occupancy based on the codon one position 3′ of the A site, which has not yet entered the decoding site.

Seven different partition schemes based on gene and codon position were tested, from one that separates all genes and codon positions, totaling 16 partitions, to non-partitioning of the data (analyzing it as one single partition).

Phylogenic analysis based on all three codon positions or first and second codon positions of PCGs can get similar results of phylogenetic relationships of Hemiptera [ 14, 16].