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Findings, based on codon diversity, must be integrated with direct comparisons of sequences [ 8] that allow to better define the optimal task that each gene can perform i.e. to be used at low taxonomic level or at high taxonomic level.
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All three were predicted to be low expressed based on codon usage by the PLS model.
COrrespondence Analysis of codon usage (COA) was calculated based on codon usage as well as Relative Synonymous Codon Usage (RSCU).
The codons for sTfR were optimized using human preferred codons based on Codon Usage Database (Kazusa DNA Research Institute, Japan).
Therefore, our model, rather than rely on CUB, is based on codon frequencies.
(V2) VIABLE High confidence for viable mutations (novel codon predictions) is assigned based on codons observed in the expanded library (eg, DENV-1234 codon frequency matrix; Observation O4).
It is interesting that natural populations in China have relatively high genetic diversity based on the nucleotide diversity and haplotype diversity (Table 1).
In B. subtilis the proportion of the tRNAs pairing to more than one codon is calculated based on the codon usage ratio.
There is some variation in the observed diversity patterns based on the different diversity measures applied.
The allelic diversity was based on Nei's diversity [51], which is the calculation 1-Σ (allele frequency)2.
Next, we calculated a similar score based on gender diversity.
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