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The literature data can be queried either based on cancer type or gene name.
However, these mutations differ based on cancer type and ethnicity of the patients.
Subgroup analyses were performed based on cancer type, the source of controls and ethnicity.
Figure 1 shows the percentage of patients receiving chemotherapy based on cancer type.
In addition, a stratified analysis was also performed based on cancer type, ethnicity and the source of controls.
Cancer patients were stratified by cancer site and into cohorts based on cancer type (hematologic and solid).
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The functions of the data mining tools integrated in HPVdB include antigen and epitope/ligand search, sequence comparison using BLAST search, multiple alignments of antigens, classification of HPV types based on cancer risk, T-cell epitope prediction, T-cell epitope/HLA ligand visualization, T-cell epitope/HLA ligand conservation analysis, and sequence variability analysis.
A set of computational tools for an in-depth analysis, such as sequence comparison using BLAST search, multiple alignments of antigens, classification of HPV types based on cancer risk, T cell epitope/HLA ligand visualization, T cell epitope/HLA ligand conservation analysis and sequence variability analysis, has been integrated within the HPVdb.
We also conducted subgroup analyses based on the cancer type, ethnicities and source of controls.
It is desirable to define cutoff values based on different cancer type populations.
The Cancer Proteome Atlas (TCPA) links TCGA genomics data with RPPA proteomics data, also providing visualization of networks based on TCGA cancer types (http://app1.bioinformatics.mdanderson.org/tcpa/_design/basic/index.html).html
More suggestions(15)
based on cancer prevalence
based on protocol type
based on cover type
based on cancer stem
based on cancer registration
based on venue type
based on cancer bioassay
based on image type
based on cancer vaccine
based on hair type
based on rock type
based on cancer mortality
based on cancer registry
based on cancer profiling
based on cancer incidence
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