Sentence examples for based on branch lengths from inspiring English sources

The estimation of substitution rates by PAML is based on branch lengths of sequences in the phylogenetic tree.

Age estimates of the Dehalococcoides clade from the Splitstree consensus network are based on branch lengths of strains to the common network node.

Mean values and standard deviations were calculated based on branch lengths, for which 1,000 times maximum likelihood bootstraps were obtained.

The SCPG method calculates squared changes based on branch lengths from the reconstructed tree assuming a Brownian motion model, i.e. steady gradual change (SCPG).

Calculations resulted in distinctiveness values (i.e., portion of the phylogeny attributable to each species, based on branch lengths, where shared branches are divided equally among descendant lineages) for each taxon relative to the other species present at the site.

Although A. acuta, A. decemloba, and A. tenella form a highly supported monophyletic clade, one accession of A. decemloba (6VA) is distinguished from all other accessions of these three taxa based on branch lengths that are significantly different than zero and 98% bootstrap support (Fig. 3).

Therefore, dS serves as a good proxy for branch length and all conclusions based on branch length will be true for dS as well.

Worryingly, our relative rates tests confirm the prediction (based on branch length differences in 18S rRNA trees), that subclades have characteristic but very disparate rates.

Based on branch length, all of homeologs from the two tetraploid species had unequal rates of sequence evolution following allopolyploid formation.

For example, AvBD5, 7, 10, 12 and 14 of Galliformes were inferred to be under diversifying selection between 84.5 and 37.9 million years before present (evolutionary time estimated based on branch length in Fig.  1), prior to the divergence between family Phasianidae (chicken and turkey) and Odontophoridae (northern bobwhite Colinus virginianus).

Monophyly of 24 of the 29 sampled species was supported based on significant branch lengths of and high bootstrap support for subtending branches.