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While our coverage of the Antennariidae is poor, an on-going molecular study by one of us (RJA), based on both mitochondrial and nuclear genes and considerably more taxa (25 species and 10 genera), also results in paraphyly for Antennarius.
In conclusion, our phylogeograpghic analyses based on both mitochondrial and nuclear DNA indicate three divergent lineages of modern Amphiuma that closely correspond to the three currently recognized species.
Furthermore, we investigated the phylogeny and evolutionary history of silkworm based on both mitochondrial loci and nuclear loci sequences [ 14].
In this case there was clear differentiation, based on both mitochondrial DNA and microsatellites, between lines from populations in Finland, Canada and USA.
Our results and those of a recent molecular study based on both mitochondrial and nuclear data sets [ 7] support a vicariant history of cichlid divergences, while other researchers [ 19] have argued for the dispersal hypothesis.
As species-level molecular phylogenies based on both mitochondrial and nuclear markers have become more common, it has become clear that there is often well-supported conflict between the genomes for certain clades in given phylogenies [ 9].
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New molecular data reject Pulmonata as a natural group based on both nuclear and mitochondrial data [ 32, 37, 45].
To overcome the challenges, we used both ML and BI approaches based on both nuclear and mitochondrial genes, and found no incongruence between the two tree reconstruction approaches.
Here we present a robust phylogenetic hypothesis and divergence time estimates for the birds-of-paradise (stricto sensu), based on both nuclear and mitochondrial sequence data.
We addressed the phylogeography, evolutionary history and genetic structure of populations of Z. quitzeoensis through a sequential approach, based on both microsatellite and mitochondrial cytochrome b sequences.
Comparative multi-locus analyses based on both nuclear and mitochondrial genetic markers are probably the most efficient and informative approach to discerning the relative role of historical events and life-history traits in shaping genetic heterogeneity.
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