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Alternatively improved technology such as sequencing long regions of DNA (e.g., whole or partial chloroplast genomes) may enable identification based on both genome architecture and additional variation captured by simply increasing the total amount of sequence.
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CROC [ 31] also uses the hypergeometric distribution to find genomic regions or gene clusters enriched in over/under-expressed genes, and supports calculations based on both whole genome data and individual chromosome values.
> -wrap-foot> The CCDS data set size continues to increase with each analysis based on both the computational genome annotation updates, which integrate new data sets submitted to the International Nucleotide Sequence Database Collaboration INSDCC, http://www.insdc.org/), and on ongoing curation activities that supplement or improve upon that annotation.
Based on both cytology and genome sequence assembly (Schmutz et al. 2010), Gm01 is a nearly acrocentric chromosome, whose short arm (Gm01-SA) and long arm (Gm01-LA) correspond to the 5′ and 3′ ends, respectively, of the corresponding pseudomolecule (see Figure 2A).
Variant effects were analysed based on both the UMD3.1 and Btau4 genome annotations [ 67, 105] using customized perl scripts.
To extend this observation, we systemically identified the orthologs of yeast and human polyadenylation factors from 10 plant species chosen based on both the availability of their genome sequences and their positions in the evolutionary tree, which render them representatives of different plant lineages.
We inferred the evolutionary relationships among pathovars based on both the evolution of the core genome and gene repertoire similarity of the flexible genome.
This is the first time that we precisely report close relationships between the S and B genomes based on both coding and non-coding sequence comparisons.
Dr. Venter plans to publish a human genome sequence based on both Celera's and the public consortium's data.
Elemento's lab is building a database of important cancer genome mutations based on both their own data and the cancer research community's discoveries at large.
In addition to developing models, Elemento's lab is building a database of important cancer genome mutations based on both their own data and the cancer research community's discoveries at large.
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