Sentence examples for based on bit score from inspiring English sources

The protein with the best BLAST match (based on bit score) was then searched back against the original genome and only those proteins that had reciprocal best BLAST scores were considered as putative orthologs.

The nodes of a given TC are incrementally assembled together where the order is based on bit score and the number of ESTs.

RefSeq proteins and Gnomon models for each taxa were queried against the Swiss-Prot database [ 3] using BLASTp with default parameters, and the best hit selected based on bit score with at least 50% query coverage.

First, a pair-wise reciprocal blast was performed of which the best hits based on bit scores were selected.

Hits were considered significant based on bit scores ≥45, which roughly correlated to 2 nucleotide differences over the length of a 30 nucleotide spacer.

Although this gives in general a reliable prediction of gene presence or divergence, it is possible that two genes with significant stretches of sequence similarity will be classified as divergent based on bit-scores, e.g., when two genes differ in size due to differences in repeat numbers.

Thus it is possible that the second hit is almost as good as the top hit except for a difference of a few bits (based on the Bit score reported) while being as significant as the top hit.

The previous analysis is based on bit error rate.

The best hit was selected for each TF based on highest bit score, using the length of the aligned region as a deciding factor where bits scores were equal.

Transcriptome data identified 116 CYPs based on highest bit score and significant E-value.

Top hits were considered based on highest bit score and E-value.