Sentence examples for based on annotations retrieved from inspiring English sources

Based on annotations retrieved from mirBase (Griffiths-Jones et al., 2008), gtRNAdb (Chan and Lowe, 2009), Ensembl and Refseq, we identify intervals of known ncRNA classes in published deep sequencing data and benchmark our scoring system based on its ability to reassign an interval to its correct class, after its class label has been removed.

Such descriptions are usually based on annotations made by humans.

a Observations based on annotation.

An extended functional annotation was built based on data retrieved from the plant genome database Phytozome and from an inference of function using homology between Populus and the model plant Arabidopsis.

Based on functional information retrieved from the databases, these genes do not show any clear functional enrichment, and many of them have no annotation, making it difficult to compare our results with SI systems characterized on model plants.

Hence, the UniProt sequences and their associated annotations (based on UniProt annotation file dated 16-09-2010) were retrieved based simply on the keyword FT_TRANSMEM.

The sequence of each annotated lncRNA was retrieved using Galaxy based on these annotations, and the lncRNA candidates with the identical sequence and genomic locus were regarded as the same transcript.

We firstly retrieved CAZyme sequences based on GenBank annotations of Tr, Ta, and Tv genomes and annotated Pfam domains in these sequences.

In addition it displays all the experimentally based annotations dynamically retrieved from the live GO database.

The lists of coding and non-coding RNA identifiers used to retrieve corresponding sequences were built based on gene annotations obtained from the NCBI ("Homo_sapiens.gene_info.gz" from NCBI ftp site: ftp://ftp.ncbi.nih.gov/gene/).nih.gov/gene/

BJ improved the annotation of Ostreococcus genes, based on existing annotations and databases search.