Sentence examples for based on annotation by from inspiring English sources
Additional File 5 shows 1,508 UniGenes classified as transcription factors based on annotation by the COG database, accounting for 8.9% of the annotated UniGenes.
The significantly regulated genes were grouped into functional categories based on annotation by Gene Ontology, pathway (KEGG and Ingenuity) analysis and PIR keywords using Genespring and DAVID version 2007.
Assignment of genes to functional categories was based on annotation by the International Medicago Genome Annotation Group (medicago.org/genome/IMGAG/).org/genome/IMGAG/
Identity of transcripts was based on annotation by Affymetrix, Inc. [ 21] and by comparison of the target bovine UniGene sequence to the March 2005 Bovine Genome Sequence Assembly [ 22] using BLAT analysis.
FG GAP domains were defined as a region from 8 AA N-terminal of the calcium-binding domain to 18 AA C-terminal of the calcium-binding domain, based on annotation by uniprot.org of the second, third, and fifth FG GAP domains in M. musculus LINKIN.
Finally, significant probe-sets were collapsed to well-annotated genes, based on annotation provided by Affymetrix, and then subjected to literature analysis through PubMed.
Based on annotation of proteins by sequence similarity, (1) P. ingrahamii has a large number (61) of regulators of cyclic GDP, suggesting that this bacterium produces an extracellular polysaccharide that may help sequester water or lower the freezing point in the vicinity of the cell.
These genes of different species were pooled and finally subjected to GO enrichment analyses based on annotation of their chicken orthologs, by Cytoscape v.2.8 [ 84], using gene set of the entire chicken genome as background, with hypergeometric test and a significance cutoff of P < 0.01.
The amplified products were sequenced using an ABI3730 sequencer by BGI.> The localization of SNPs in coding regions was based on annotation of gene models as provided by the Brassica Genome Database (http://www.ocri-genomics.org/bolbase/).org/bolbase/
Annotations of the CRAFT corpus were done by biologists based on annotation guidelines that also included a set of linguistic aspects for text span markup.
Such descriptions are usually based on annotations made by humans.
