Sentence examples for based on all sequences from inspiring English sources
A phylogenetic analysis was performed based on all sequences from influenza virus N1 genes from human and avian sources.
Figure 3 plots these theoretical maxima for Clustal Omega, Kalign and Muscle (3a), and Mafft (3b) for each HomFam family based on all sequences in each family.
To insure that the phylogenetic proportions of housekeeping gene sequences extracted from each sample were relatively representative of the sample as a whole, phylogenetic profiles were generated based on all sequences found within each environment (Materials and Methods).
There was some expected variation in certain profiles (supplementary fig. S2, Supplementary Material online), especially between environments with low numbers of RpsL, RpoB, and GyrA/ParC sequences, but overall, the phylogenetic profiles generated based on the three housekeeping genes were congruent with those generated based on all sequences within their environments.
This is consistent with previous phylogenetic analyses based on all sequences of the triterpene cyclase protein family (including OSC, SHC, and STC) available from public databases that failed to identify sequences closely related to the sole eukaryotic (ciliate) STC known at that time [ 17].
The RDpred approach based on all sequence features achieved a RMSE of 1.84 and a MAE of 1.36, receptively, while for Yuan and Wang's approach a RMSE of 1.91 and a MAE of 1.41 were respectively observed.
Briefly, for a given genomic segment, the frequency of each distinct DNA methylation pattern observed is calculated based on all sequence reads mapped to the locus.
Based on all sequencing data (Table 1), there now appear to be three hotspots mutations within PIK3CA: H1047R, E542K and E545K.
Based on all sequence analyses, we dissected the sAC region between amino acids 466 and 1610 into eight fragments covering putative domains (see Supplementary Table S1 at http://www.bioscirep.org/bsr/032/bsr0320491add.htm) for the identification and characterization of functional sAC domains.
A whole-genome microarray was constructed based on all the available annotated genome sequences of C. burnetii in the databases.
