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The argument is based on a reciprocal relationship between the port and the city, since the advent of a free port.
This was based on a reciprocal BLASTN search, where each plastome was used as the query and subject (see Methods).
The most probable set of orthologous TCS proteins shared by the four Azospirillum strains was identified based on a reciprocal best BLAST hit criterion, as previously described [ 15].
Our experiment was based on a reciprocal cross-infection design involving three Ae. aegypti isofemale families and three DENV-1 isolates.
One of the most ambitious genetic improvement programs for this species has been conducted in the Ivory Coast and is based on a reciprocal recurrent selection scheme (RRS) that was launched in the 1990s [ 10, 11].
The 8605 gene triplets were based on a reciprocal best hit criterion in pairwise subgenome matches similar to the approaches in Pfeifer et al. (2014) and Mayer et al. (2014) and applying an identity threshold of 90%.
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RSD and RBH are based on a similar concept: reciprocal identification of the most similar proteins between two genomes, and display the highest level of conditional dependence among orthology detection methods (Figure 3).
Ortholog sets were based on a variation of best reciprocal BLASTP hits, which favoured hits with a higher percentage identity (see Methods).
The competitive mapping graphs were generated using GraphPad Prism V5.01 and scripts developed in PERL and R. Ortholog genes between Esmeraldo-like and non-Esmeraldo-like CL Brener haplotypes were identified using OrthoMCL v2.0 [ 65], based on a combined approach of "reciprocal best hits" and a "Markov clustering algorithm" (MCL).
However, in a recent work based on a larger number of individuals a reciprocal monophyly of both lineages is doubted [ 47], and, hence, we provisionally recognize H. agilis as monotypic.
based on one reciprocal match to Methanosarcina barkeri coenzyme F420-dependent methylenetetrahydromethanopterin (PDB 1z69; chain A), which had 21% sequence similarity to the source protein.
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