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As an alternative, we should use the Functional Diversity (FD) index [34], based on a dendrogram, to cope with species poor communities (less than 3 species) and thus use the entire range of species richness available in BIODEPTH.
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This makes HCA results, based on a single dendrogram, very unreliable.
Herpetol., Prague: p. 123) that associated toads from Corsica, Sardinia and NW-Italy (all from the B. balearicus range) with a ~0.25 Nei's distance from toads from Vienna based on a UPGMA dendrogram (B. viridis; [ 71] quoting Lattes' abstr).
This analysis was used to identify and separate the samples into collection site-related groups based on a neighbour-joining dendrogram; finally, the results were compared with the morphological characteristics.
Clustergram takes in an input matrix of interest and generates a dendrogram based on a specified distance metric.
Next, the UPGMA algorithm was used to construct a dendrogram based on a matrix of pairwise allelic differences between the 62 STs of our dataset.
Prior to the gene expression analysis, the samples were paired in a dendrogram based on a comparison of the expression profiles of all the genes.
The SELDI mass spectral profiles are visualised in Figure 3 which is based on a Heat map and a dendrogram.
Singh et al. (18 ) presented a dendrogram based on a 341-nt region of the VP1 gene and concluded that several recent Southeast Asian strains belonged to two completely new genotypes.
The most popular approach of cluster analysis is hierarchical clustering [12] in which data are merged together based on a tree structure called dendrogram.
FD estimates net species similarity or differences as branch lengths from a functional dendrogram based on a multivariate distance matrix [24].
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