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Fc = Fold change based on GeneChip data.
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Among the transcripts that were found in the H56 library (iDC minus monocytes) and were also detectable on the GeneChip microarrays, about a third were concordantly discovered as up-regulated in iDC based on GeneChip microarray profiling using non-subtracted RNA samples (labeled as "GeneChip Concordant" in Figure 4a).
SURE elements respond to, among others, WRKY transcription factors, which are in turn sugar-inducible [ 62], and at least two WRKY factors are upregulated based on our GeneChip data upon cold storage.
All expression data for this database are based on affymetrix GeneChip, information which has been released by NCBI GEO.
Coexpression data represented by the PCC value and the MR based on RMA-summarized GeneChip data used in this study are available at (http://atted.jp/download.shtml) for Arabidopsis and (http://coxpresdb.jp/download.shtml) for human, mouse and rat.
To investigate whether the FARO approach could include data generated on different platforms, gene expression responses were extracted from AFGC cDNA studies and compared to our compendium of Arabidopsis gene expression responses based on Affymetrix ATH1 GeneChip data.
The DETs were annotated based on NetAffx annotation data for cotton GeneChip (http://www.affymetrix.com).
13Estimates based on fragmentary data.
"Everything was based on false data".
Every line is based on research data.
The gene expression profiles were based on Affymetrix GeneChip® Mu11k (chip A and B) for the OC-1 cell line and GeneChip® Mg_U74Av2 arrays for VOT-E36 cell line.
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