Sentence examples similar to based method implement in from inspiring English sources
The maximum likelihood based method implemented in the codeml program of the PAML package (v3.15) [ 38] was used to detect positive selection as well as identifying positively selected sites, when the number of related sequences was sufficiently high.
Therefore, we used a more powerful maximum-likelihood based method, implemented in the CodeML subroutine of the software PAML [ 63] which allows the rates of ω = dN /dS to vary among codons [ 31, 64].
Ancestral distributions were estimated on the Bayesian consensus phylogram under Maximum Parsimony using MacClade v4.0 [ 66] and under a dispersal-vicariance event based method implemented in DIVA 1.1 [ 83].
Confirmed evidence for linkage at the 6p22.3 locus was followed up with allelic association studies using the family based methods implemented in TRANSMIT [ 11].
In the present study, three methods were used: a distance-based method called ParaFit implemented in CopyCat [ 80] and topology (or tree -based metree -basedmethodsimplementednd TreeMap 3 (developed by Mine Charleston and available at http://sites.google.com/site/cophylogeny).
We estimated the time of divergence between the western North Atlantic and Mediterranean populations using a coalescent-based method implement in IMa [ 45].
The phylogeny was constructed using a maximum likelihood based method as implemented in PhyML [ 72] using the JTT substitution model [ 73] with the default proportion of invariable sites (0.0) and rate heterogeneity between sites corrected by a gamma law (using the default gamma parameter of 1.0 and eight rate categories).
The gating method is based on a method implemented in [16, 17] by Dugan.
Therefore, the air-jet based liquid squeezing method implemented in our non-contact wettability assessment system would be the most suitable for the in-liquid wettability assessment of high wettability surfaces.
A model based Bayesian clustering analysis method implemented in STRUCTURE software version 2.3.4 (Pritchard et al. 2000) was used.
This result is verified numerically by specially designed procedure that is based on wave propagation method implemented in CLAWPACK.
