Five benchmark microarray based gene expression databases are used in this study: GLI-85 (also known as GSE4412 [48], GLA-BRA-180 (also known as GDS1962 [49], CLL-SUB-111 (also known as GSE2466 [50], TOX-171 (also known as GDS2261 [51], and SMK-CAN-187 (also known as GSE4115 [52].
In this article we introduce Arabidopsis Gene Family Profiler (arabidopsisGFP, aGFP), a web-based gene expression database with visualization tools.
We have used a microarray-based gene expression database to derive a panel of candidate biomarkers for early detection of SSAKI in critically ill children with septic shock.
Considering the fact that public microarray database is consist of gene expression profiles of various experiments with various type of platform, pathway based gene expression similarity measuring method could be successfully applied for searching large public microarray databases.
To increase our chances of successfully amplifying and sequencing cDNAs, we restricted our study to genes that are known to be expressed in colorectal cancer cells, based on a gene expression database at the University of California, Santa Cruz (UCSC) [ http://genome.ucsc.edu/index.html].
Loc_Os06g45560 was transcribed in seedling and embryo/endosperm 25 days after pollination but Loc_Os06g45550 was not transcribed based on the available gene expression database (RGAP, http://rice.plantbiology.msu.edu/expression.shtml).shtml
We then inferred the functional bias of paralogous CNS-harboring genes based on the Gene Ontology database and the gene expression database.
Next, we analysed the expression profile of proteins containing MHC class I or II ligands based on their mRNA abundance as determined by DNA microarray analysis obtained from the GNF gene expression database [18].
To aid research on fungal gene expression, we constructed a novel, comprehensive, free database, the filamentous fungal gene expression database (FFGED), available at http://bioinfo.townsend.yale.edu.edu
The gene expression database BioGPS (http://www.BioGPS.org/) and the software Genevestigator (http://www.Genevestigator.com) served as platforms to obtain third-party gene expression information.
Other large gene expression databases like Genelogic's gene expression database may be more robust but are unavailable to the public [28].
