We used the web based database for annotation, visualization and integrated discovery (DAVID) [ 12] for functional annotation and ontology of the detected genes, and the expression analysis systematic explorer (EASE) for identification of enriched biological themes within the gene lists as reflected by an EASE score of < 0.025 [ 13].
Thus, community based databases for SSRs will expedite the implementation of SSR markers in genetic and genomic studies in N. crassa as well as in other fungal organisms.
We employ the LAMP (Linux, Apache, MySQL, PHP) model of web service management to produce a dynamic web-based database for the user.
To address this important question, we took advantage of the data in COSMIC, which is the most comprehensive, annotation-based database for the somatic mutations from numerous patients with cancer type information.
In addition to usual care, a web-based database for the registration of diabetes-related data is used and is also applied to monitor mean values of risk factors and whether or not patients received diabetes care in line with the Dutch guidelines for type 2 diabetes.
These results suggest that oligonucleotide frequency based database of barcode sequences can be useful for rapid species identification in preference to the distance based barcoding database.
EUROCarbDB (https://code.google.com/p/eurocarb/) is a European based core database for the collection of carbohydrate data and the development and housing of corresponding bioinformatics tools [ 87].
Until now, Java Applets are still the de facto standard for web based databases.
In particular, the ability to control for the use of anticoagulants and type of anesthesia both important determinants of transfusion risk is unique for population based databases.
