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These results are in concordance with earlier reported marker gene based analyses of this data set [ 18].
Microarray- based analyses of the salt responses in Arabidopsis have been published in several reports.
Non-targeted mass spectrometry based analyses of the patients' blood samples were done by Metabolon similarly to the endotoxemia study.
Region of interest based analyses of the dynamic contrast-enhanced MRI (DCE MRI) data that showed differences between decompressed and control animals in frontal cortex and thalamus.
To our knowledge, network based analyses of the metabolism of P. falciparum have so far only been applied by Yeh et al. [ 23] and Fatumo et al. [ 24].
Codon based analyses of selection were conducted using maximum-likelihood methods as implemented by HyPhy [ 58].
Our metabolomic based analyses of urine allowed the separation of TB patients' samples based on treatment time points.
This definition overcomes limitations of purely graph based analyses of metabolism by exploiting the functional links between reactions.
This illustrates an important, albeit obvious characteristic of RNA-Seq based analyses of allelic expression – that the ability to measure allelic ratios critically depends upon read depth.
Because our analysis does not resolve the basal relationships of arachnid orders well, it is not in conflict with actual morphology based analyses of arachnid interrelationships [ 27, 36].
PCR based analyses of genes namely cagA, glmM, babB [ 14] and oipA were carried out to ascertain the quality of DNA samples we used.
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