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Linear interpolation was used to estimate the fold enrichment at each base position within the window.
To estimate the sequencing-error rate as a function of base position within the read, we compute read read overlaps that are seeded by short exact matches.
Statistics reported include the overall mismatch, insertion, and deletion error rates; the error rate for each nucleotide; and the error rate by base position within the read.
Finally, flow cell lane, machine cycle (base position within the read), sequencing context (preceding and current nucleotide) or other technical aspects may influence base quality scores, which help characterize the quality of the bases in the individual reads.
In contrast, Illumina v4 exhibits a strong influence of base position within the read on error rate, characterised by sudden peaks and a marked increase in error rates near the end of the read.
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GERP scores were cataloged for all base positions within the position weight matrix, and binding sites harboring motifs were compared across tissues to determine tissue specificity.
If mutation bias variation patterns do occur, they should affect all base positions within the gene, including coding and non-coding sequences.
Based on the alignments, each genomic position within the Alu element was assigned to a nucleotide position within the consensus sequence.
Given that temporal adverbials of this sort have been proven to merge in the domain of TP cross-linguistically (Cinque 1999), the reflexive trigger in question should have moved from its base position within VP to a position around or above TPa.
Database URL: http://cgd.jax.org/cgdsnpdb/ Single nucleotide polymorphisms (SNPs) are variable single base positions within a genome that represent the simplest and possibly most common type of genetic variation.
We further investigated the variations between these base positions within our V. parahaemolyticus isolates.
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