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The LTBP3 gene (NM_001130144.2, 11q13.1) spans 28 exons, has 20 372 base pairs and generates 22 different transcripts (only two major transcripts with CCDS number, eight without a protein and two resulting in nonsense-mediated decay).
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For each base pair of the yeast genome, we averaged all measurements covering that base pair and generated a mean nucleosome occupancy map of the yeast genome.
Consider that the average human whole-genome sequence contains approximately three billion data points (ie, 'base pairs') and generates roughly 100 gigabytes of data, and that the whole genome of a tumor and a matching normal tissue sample consumes 1 terabyte of uncompressed data.
A histogram of the distances between every + strand read and − strand read in a window of 300 base pairs was generated and the average fragment size was determined by summing the distances weighted by their abundance.
The occurrences and the frequencies of oligonucleotides from one to 50 base pairs are generated and accumulated from each of the complete genome sequence.
We consider that charge carriers are localized on a base pair and interact with phonons generated by motions in the double helix.
Approximately 50 70 million reads with an average read of 51 base pairs were generated for each replicate sample and used for further analysis.
Overlapping PCR fragments of approximately 2000 base pairs were generated using DEN-2 specific primers and Advantage cDNA polymerase (ClonTech, Palo Alto, CA).
Paired-end shoreadsads of ~100 base pairs were generated for four samples (ER18, 16D, selected pool and unselected pool).
Products ranging from 200 to 500 base pairs were generated to screen the exons of TERF2IP, TERF2, LRRC29 and FBXL8 (4, 10, 4 and 6 products, respectively).
Complete mitochondrial CR sequences (1183 base pairs) were generated for 838 marine iguanas (most of which were also analyzed for microsatellite loci).
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