Sentence examples for base pair model was from inspiring English sources
The individual base pair model was used throughout our target prediction procedures.
Chargaff's first parity rule, as this is now called, was an important clue that James Watson and Francis Crick used to develop their base pair model for the double helix structure.
In the general base-pairing model, pairs are assigned stochastically according to an algorithm which allows us to simultaneously tune the distribution of junction orders and the maximum ladder distance (MLD).
The net pairwise divergence per base pair (dA) was calculated using MEGA4 [ 52] under the Kimura two-parameter model [ 53].
The complex between JAZ ZF3 and a 19 base pair dsRNA, VAIminMut, was modeled using the program HADDOCK utilizing backbone chemical-shift perturbation data from NMR titrations as ambiguous interaction restraints together with general information on protein-binding sites on RNAs.
A thermodynamic model for staking of RNA base pairs is available and is commonly used in RNA structure prediction [ 68].
Most of the QM data stored here pertains to isolated base pairs, which are modeled by complete or partial removal of the backbone atoms.
To our surprise, we found that only 3 of the 12 mismatches (dTTP/dG, dGTP/dT, and dTTP/dT) clashed with side chains in the NBP while the rest of the nascent base pairs could be modeled perfectly well into the NBP of the wt RB69pol.
Non-Watson-Crick base-pairing models display alternative hydrogen-bonding patterns; examples are Hoogsteen base pairs, which are A-T or C-G analogues.
The result is that what had been an AT base pair is changed to a GC base pair.
