Sentence examples for base pair distance of from inspiring English sources

We experimented with various measures for identifying "low-quality" sequence (see Materials and Methods), but settled on the relatively simple measure of the minimum quality score observed within a 5 base pair distance of the indel.

Hence, the mRNA subsequence was locally folded in a 200 nt window with a maximal base pair distance of 100 nt.

The constant l is a scale factor, since the maximum base pair distance between two molecules of length l is proportional to l.

The base pair distance is defined as the number of base pairs that have to be opened and closed to transform a given structure into the target structure.

Likewise, we call di,jNA(S2) the set of base pair distances between each of the molecules in populations NA and S2 for each of the realizations.

Thus, we considered that measuring the positions of tRNA genes based on their base pair distances from the 3' end of the CR is justified.

A complete list of KRM2 gene names, 60-mer rhesus DNA probe sequences and base pair distances from the 3' UTR of corresponding human RefSeq gene transcripts is included in supplemental Table 3 [see Additional file 4].

We focus our analyses in the three populations E, NA, and A. In the following, we will call di,jE(S1) the set of base pair distances between each molecule i in populations E and the target structure S1 for each realization j.

The base-pairing probability distribution (BPPD) per base in a sequence were measured using NQ [ 83], while the base-pair distance for all the pair of structures were measured using ND [ 84].

The elements of the vector included a Boolean indicating whether or not the cAMP Response Element (CRE) was present, the number of nucleotide base pairs ("distance") between the CRE ("TGACGTCA", "CGTCA" or "TGCGTCA") and the Transcription Start Site (TSS), and the "distance" between the CRE and the TFIID bind site ("TATAGAA", "TATAAAA," "TATAG", or "TATA").

For this purpose a naive conversion from genetic distance to base pairs distance was adopted using the estimated size of Soybean genome (975 Mb) (http://www.phytozome.net/soybean.php) and the Soybean genetic map length (~2500 cM) [ 25] resulting 1 cM ~ (975 M/2500) ~ 390 Kb.