Sentence examples for base pair codon usage from inspiring English sources
The exonic sequences are functionally dependent on a mechanism involving the three base pair codon usage required for coding proteins, whilst intergenic regions and intronic regions are non-coding.
We used the program MEGA version 4.0 [ 64] to obtain estimates of nucleotide composition, nucleotide pair frequencies, and codon usage.
Base frequency, codon usage, and intercodon identity were analyzed in five filarial parasite species representing five Onchocercidae genera.
The gene arrangement, base composition, codon usage and tRNA structure of A. planci are similar to those of A. brevispinus.
Base composition and codon usage were calculated using the DNA Stats and codon usage features available from the Sequence Manipulation Suite (http://www.bioinformatics.org/sms2/dna_stats.html).html
Editseq and GeneQuest software (both from Dnastar) were used to analyze base composition and codon usage.
These differences in base composition and codon usage bias were, however, not reflected in the amino acid composition.
In fact, visual inspection suggests a very similar codon usage pattern between the viral groups of insect-only Flavivirus and Hepacivirus and their respective host groups, which was further evidenced by hierarchical clustering analysis based on codon usage (Figure 5).
COrrespondence Analysis of codon usage (COA) was calculated based on codon usage as well as Relative Synonymous Codon Usage (RSCU).
The codons for sTfR were optimized using human preferred codons based on Codon Usage Database (Kazusa DNA Research Institute, Japan).
