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If the base of the reference design [Final Report on EFDA contract 04/1129, ITER ICRF antenna and Matching system design (Internalmatching), April 2005] is kept unchanged, several significant modifications have been proposed for a better efficiency and reliability.
By moving the window in 1 bp steps, this procedure yields a % identity value for each aligned base of the reference genome in an aligned region.
Most of the tools for SNP calling analyze one base of the reference genome at a time and do not use adjacent locations to help call SNPs (positions are considered independent).
Expressed in non-mathematical terms, we asked for each position the question, whether it is reasonable to assume that the position contains the base of the reference sequence (whereas most SNP callers ask the question whether there is a chance that the position contains a SNP).
For instance, if the i-th base of the reference motif and a specific binding site is m i and f i, respectively, the retained binding affinity is defined as μ i, m i, f i ; 3) a vector that denotes the optimal base pairing probability of k bases in the motif θ = (θ i); and 4) the penalty for the deviation from the optimal base pairing probability α.
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We assessed the risk factors for, prevalence of (based on the reference standard), treatment of and outcome of delirium reported in the identified diagnostic accuracy studies using the individual study definitions and statistical tests employed therein.
a Physical maps of the pi66 region based on the reference sequences of cvs 93 11 and Nipponbare.
In case of positive control, we based on the reference strain of Porphyromonas gingivalis W83 after lysis and neutralisation procedures or DNA isolated from it.
The majority of the data presented are based on the reference genome of cv.
Relative quantification was based on the reference of the following 5 constitutively expressed reference genes (Table 4).
Based on the reference test of troponin and/or ECG, 14 out of 121 were classified as patients with ACS.
More suggestions(17)
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core of the reference
foundation of the reference
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base of the deafening
base of the bag
base of the chimney
base of the board
base of the log
base of the rocket
base of the mountain
base of the party
base of the loaf
base of the bun
base of the pastry
base of the pier
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