Your English writing platform
Discover LudwigExact(41)
In the non-repeated regions, 36,033 loci with homozygous genotypes were identified as single base errors.
As expected from the design of the algorithm, BFAST has substantially better sensitivity than the other methods when considering combinations of single base errors.
Raw 454 reads were trimmed for remaining adapter and poly A/T tails using in-house tools based on a pattern matching algorithm that allowed for base errors.
This result can be elucidated as following: for De Bruijn graph-based method, certain proportion of base errors are incorporated into contigs during the construction of graph with k mers generated from input short reads, this process then generate less precise contigs.
We found a total of 1906 base errors and 368 indels.
As is expected, BWA-SW produces fewer false chimeric reads given lower base errors.
Similar(19)
Andy Etchebarren's wild throw turned Carlos May's dribbler into a three‐ base error and triggered Chicago's outburst.
The algorithm calculated base error probabilities based on their quality values, normalized to a PHRED scale.
In our 454 data, base error rates were very low.
Not unexpectedly, performance improved with increasing read length and decreasing base error (Table 2).
For most chromosomes, the single base error detection drops to zero after the fifth iteration (Supplementary Table S1).
Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com