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Even though the base composition analysis is not as informative as sequencing, it has enough discrimination power for the detection and identification of hundreds of microbial pathogens.
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Exhaustive base composition analysis was carried out to find out the individual base frequencies in three codon positions of each protein-coding regions of each genome under study, using the program CODONW 1.4.2 (written by John Peden and available at (http://sourceforge.net/projects/codonw/)).net/projects/codonw/
With further analysis, quantitative composition analysis is also possible.
In this study, sequence variation of mGing was firstly observed by base composition analysis of its TIR region.
Base composition analysis of TIRs indicated that two TIR sequences were not perfectly conserved among mGing copies.
We have described a novel approach using base composition analysis for viral identification.
Base composition is associated with estimates of ti/ tv.
Base composition is relatively even within the rDNAs.
Its base composition is balanced: G+C% = 49.8%.
Four base composition parameters are estimated from the average base composition of the extant sequences.
Soft X-ray spectromicroscopy based absorption near-edge structure analysis, is a spectroscopic technique useful for investigating sample composition at a nanoscale of resolution.
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