Sentence examples for base calls for each from inspiring English sources

The SAMtools program was used to calculate the per-position coverage and the base calls for each position56.

This P-value is computed for each strand separately and by considering the base calls for each pool independently.

The pyroluminescence intensity for each bead-containing well was used to determine base calls for each nucleotide incorporation step.

The various HTS technologies have different sequencing biases and error rates, and while most HTS technologies sequence the residues of the genome directly, generating base calls for each position, the Applied Biosystem's SOLiD platform generates dibase-coded (color space) sequences.

Using HaplotypeCaller to call variant base calls for each wAnaITG genome of D. ananassae could result in a site being called as a heterozygote either because the two allelic copies of a specific wAnaITG sequence differ, or because the two duplicated regions on the same chromosome differ from each other (much like paralogs of a single gene might differ).

The output files presented a base call for each nucleotide position and allowed a direct comparison with the reference sequences obtained by Sanger sequencing.

In addition, we used only reference base calls for the island 'pseudoconsensus' sequences.

To ensure quality, all sequences were determined on both strands and base calls for all chromatograms were verified by eye.

The redundant representation of input sequences was used to calculate the percentage base calls for every sequence position covered ≥ 30×.

In our assay, nucleotide base calls for SNPs were exported and assessed in Sequenom Typer Analyzer version 3.3.

Affymetrix GDAS 2.0 with optimized settings (Additional file 1) was used for assignment of base calls for Harvard arrays and GSEQ 4.0 was used for Cincinnati arrays.