Sentence examples for base calls at each from inspiring English sources

We then extracted the base calls at each BOPA SNP location using tools from the GATK.

Likewise, the consensus sequence is determined based on the majority of base calls at each position.

The mpileup file contains the base calls at each position, for each library.

We wrote a series of C programs to calculate divergence statistics (see Statistical Model of Divergence section) and to estimate LD between all SNP pairs for which there were at least 20 read pairs within a population with valid base calls at each site.

We found that the average error rate for each mutation category (insertion, deletion, mismatch, and ambiguous base calls) at each base position on each strand of the amplicons in the control samples was 0.22, 0.16, 0.036, and 0.014%, respectively (Fig.  1C).

As for the Illumina sequencing described earlier, combined assemblies were generated by relinearization of the reference and the consensus base call at each site was used.

For overlapped bases, this is the posterior probability that the consensus base is wrong, given the base calls at that position in the alignment and their respective quality scores.

To compare the base calls in our sequencing data to the genotypes from HapMap for the three samples that we sequenced, we made a list of SNP calls obtained using Maq and of base calls at all the positions that had been genotyped in HapMap and had a minimum of 10X sequencing coverage in our data for each sample.

Base calls at 2,192,560 informative SNP locations are known for all 16 DGRP lines.

The primary base call of the alternate SNP positions was compared with the parental base calls at the position.

This process allows for a revision of any potential assembly errors and ascertains the consensus sequences representing the majority base calls at heterozygous sites.