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Base calling was done using Illumina pipeline software.
Base calling was done using the Phred program.
The base calling was done on the Illumina GAP v1.3 pipeline.
Base calling was done on the HiSeq instrument by RTA 1.17.21.3.
Real-time analysis and base calling was done using the HiSeq Control Software Version 1.4.8 (Illumina).
Image analysis and base calling was done by the Illumina HCS version 1.15.1.
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Image analysis and base calling were done with the Illumina RTA software at run time.
The image analysis and base calling were done using the Illumina pipeline (v.1.6) with default settings.
Image analysis and base calling were done with the Illumina pipeline (1.8.2).
Image analysis and base calling were done using the Illumina GA Pipeline software.
Base-calling was done by Bustard [ 48], and sequence analysis was performed with Gerald (http://support.illumina.com/content/dam/illumina-support/documents/myillumina/a557afc4-bf0e-4dad-9e59-9c740dd1e751/casava_userguide_15011196d.pdf).
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