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To identify PFGE polymorphisms, band patterns were analyzed using Molecular Analyst Fingerprinting, Fingerprinting Plus and Fingerprinting DST software Bio-Rad Laboratoriess, Richmond, CA, USA).
Band patterns were analyzed to determine clonal identity.
The band patterns were analyzed with BioNumerics program version 4.0 (Applied-Maths, Kortrijk, Belgium).
The resulting band patterns were analyzed by Bionumerics software (version 4.0, Applied Maths, Ghent, Belgium) to determine relatedness between strains (Tenover et al. 1995).
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Furthermore, when the band patterns are analyzed by creating dendrograms, proximal segments (stomach, proximal jejunum, and distal jejunum) and distal segments (cecum, proximal colon, distal colon, and rectum) show a tendency to be clustered.
The DGGE banding patterns were analyzed using Gelcompar II software (version 1.61; Applied Maths, Woluwe, Belgium) to allow comparison of the gels.
Banding patterns were analyzed visually.
Banding patterns were analyzed with BioNumerics software, version 5.0 (Belgium).
The chromosome number and banding patterns were analyzed with a 300 500 band resolution.
Banding patterns were analyzed by using BioNumerics software version 6.01 (Applied Maths, Sint-Martens-Latem, Belgium).
The banding patterns were analyzed by the BioNumerics software (Applied Math, Sint-Maten-Latem, Belgium).
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