Sentence examples for bam sequence from inspiring English sources

When high-performance computing (HPC) is required, the BAM processing layer is handled by the Hadoop-BAM project [ 14], with minor modification to allow BAM sequence indexing to occur entirely within the Hadoop Distributed File System (HDFS), a storage solution that spans disks in a cluster to provide one large, distributed file system [ 15, 16].

Atlas2 relies on the standard Binary Sequence Alignment/Mapping format (BAM) sequence format, which is a widely adopted and generally supported format among NGS users [ 4].

As of version 2.0, GBrowse supports next-generation sequencing (NGS) data by providing for the direct display of SAM and BAM sequence alignment files.

The BAM sequence data sets supporting the results of this article have been curated and are available in the NCBI Sequence Read Achive (SRA).

BAM: binary sequence alignment/mapping format; GATK Genome Analysis Tool Kit NGSGS: next-generation sequencing; SNP: single nucleotide polymorphism; SNV: single nucleotide variant; VCF: Variant Call Format.

BAM: binary sequence alignment map; bp: base pair; mTOR: mammalian target of rapamycin; PCR: polymerase chain reaction; PI3K: phosphoinositide 3-kinase; SNP: single nucleotide polymorphism; WIRB Western Institutional Review Boardd.

The resultant SAM files were converted to BAM using Sequence Alignment/Map (SAM) tools v0.1.18 [ 66], where bit representing "each segment properly aligned according to the aligner" is set in SAM bitwise FLAG.

A 1.0 kb DNA fragment showing up to 65 percnt; similarity to a Bam HI repeated sequence of Vicia faba was isolated in both wild-type and mycorrhiza-resistant pea.

Using the mapping results of Apo and IR64 for the pseudo-reference sequence (bam files) and SNP information, we extracted the parental reads containing SNP by a PERL script.

Bam files and sequence coverage were visualized using Artemis v12 (PUBMED: 11120685).

BAM files for sequence reads from the Anopheles gambiae G3 and L3-5 strares are included as Additional file 9: File S1 and S2, respectively.