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In the second step, we identify solo LTRs, i.e. the unpaired LTRs resulting from recombination between LTR retrotransposons, by first applying the BAG sequence clustering algorithm [ 22] to cluster LTRs identified in the previous step, and then searching against the whole genome using sequence profile Hidden Markov Models (pHMMs) built from these LTR sequence clusters.
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There's a classic severed-head-in-a-gym-bag sequence, and where lazy cop movies set scenes in strip clubs, this one prefers a slaughterhouse.
Classifier bagging with sequence feature CTD performed better than LOCtree in differentiating the cytoplasm and mitochondrial pathways at Level 2. LocTree2 is developed using a different hierarchical pathway and hence we could do the testing only for two levels using a LocTree2 dataset under 5-fold cross validation.
By contrast, BAG-1S and BAG-1M lack this sequence and BAG-1S is largely located in the cytoplasm whilst BAG-1M partitions between the nucleus and cytoplasm (Packham et al, 1997; Takayama et al, 1998; Yang et al, 1998).
Each subject performs the walking motion 10 times which include six natural walks, two walking sequences with a bag, and two sequences with a coat.
A genome is treated as a "bag" of coding sequence for protein domains, which we simply call domains for brevity.
These were SAG 1 (primer sequences 5'-CGACAGCCGCGGTCATTCTC-3' and 5'-CGACAGCCGCGGTCATTCTC-3') (28), SAG 4, (primer sequences 5'-TGGACCTACGATTTCAAGAAGGC-3' and 5'-GCTGCGAGCTCGACGGGCTCATC-3') (29) and BAG 1 (primer sequences 5'-TCCGCCGGGAGCTTGTCCACC-3' and 5'-GCAAGTCAGCCAAAATAATCA-3') (30).
When evaluated by independent data testing, ensemble based-bagging algorithms with sequence feature composition, transition and distribution (CTD) successfully classified two datasets with accuracies greater than 90%.
In this experiment, five HD video sequences, Pedestrian Area, Tractor, Station2, Sunflower, and Blue Sky, two full HD video sequences, Speed Bag and Life and two 4CIF videos, Harbor and Soccer, are used.
In our algorithm, we treat each PBM probe sequence as a bag, and label the bags positive or negative according to the affinity level from the TF binding data.
On the other hand, the N-terminal sequences of BAG family proteins are different and have distinct functions [16], [32], [33].
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