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A total of 146,038 bacterial sequences were obtained using 454 pyrosequencing.
A total of 151 182 bacterial sequences were obtained from each of six elevations.
No genus and species level information for these bacterial sequences were obtained from GenBank.
Concordance of the Vidania phylogeny with the phylogeny of the planthopper hosts (reconstructed based on sequence data from five genes generated from the same insect specimens from which the bacterial sequences were obtained) was supported by statistical tests of codiversification.
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Bacterial genome sequences were obtained from the Kyoto Encyclopedia of Genes and Genomes database (KEGG).
Outgroup bacterial 16S sequences were obtained from GenBank and included in the alignment with the endosymbiont data (Table 4).
Additional bacterial LysRS2 sequences were obtained using NCBI Protein-protein blastp(blastp) [ 41], seeded by A. tumefaciens LysRS2 [NCBI: NP_534951].
Bacterial metacaspase sequences were obtained from the MEROPS database (http://merops.sanger.ac.uk) to incorporate metacaspases from genomes that had not been fully sequenced for extensive sequence comparisons.
Bacterial and archaeal genomic sequences were obtained from the NCBI Genome Database (ftp://ftp.ncbi.nih.gov/genbank/genomes/Bacteria/, accessed on 11 November 2013) in November 2008.
The complete sequences of 191 bacterial genomes and annotated protein sequences were obtained from the RefSeq database [ 103] created on 10th of January, 2005.
All sequences were obtained from the bacterial 16S rRNA gene, which was amplified from microbial DNA extracted from a human fecal sample.
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