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Nevertheless, the divergence of the bacterial sequences in order to acquire their new function is likely to have induced a long branch attraction artifact in this phylogeny.
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Plastid 16 S rRNA sequences comprise between 0.02 and 33.6% of total bacterial sequences in surface samples (<25 m depth).
Genomic comparisons provide candidates for further functional studies of Xff host colonization The genome of Xff 4834-R was compared to different bacterial genomic sequences in order to identify functions or putative CDSs involved in plant pathogenicity and adaptation to different ecological niches.
Bacterial sequences within the order Aquificales dominate the carbonate 'streamer' communities (70 72°C) at MHS, and are also one of the dominant phyla present in the pyritic 'streamers' from CS.
Neighbor functional linkage analysis was conducted on the clustered viral sequences in order to verify that they were encoded on viral rather than non pro-viral regions of bacterial genomes.
The obtained sequences were aligned and compared with the bacterial sequences available in the GenBank database.
We designed a low-cost library sequencing strategy, by pooling the bacterial genomes together in a controlled way prior to sequencing in order to reduce library construction costs.
The researchers extracted DNA from the placentas and sequenced it for snippets and entire bacterial genomes in order to identify and quantify microbial species and the genes they carried.
This level of coverage indicated that majority of bacterial sequences were present in the sequenced clones.
Their work indicates that genomes in databases may contain sequences from other species, even other kingdoms, such as mammalian DNA in bacterial sequences.
At last, in order to do the comparison at the same sequencing depth, 18,808 effective bacterial sequences were extracted from each sample to do the downstream analysis.> In order to compare the bacterial species richness among these samples, operational taxonomic units (OTUs) were determined for each sample at distance levels of 3 and 6%% (Table 1).
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