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But bacterial sequences can be recognized and discarded, he said.
Accession numbers for additional bacterial sequences can be found in additional file 1. Bayesian trees for the sGC and rGC proteins were constructed using MRBAYES 3.0B4 [ 80].
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With the advance of genetic engineering, sophisticated plasmids—small accessory bacterial DNA molecules, into which foreign DNA sequences can be inserted were constructed.
Therefore, any cDNAs in our samples transcribed from bacterial mRNA that possessed a poly A sequences can be expected to not contain the complete functional domain sequence and terminal codon [22].
Though the identification of prophages from sequenced bacterial genomes is difficult [ 1], prophage sequences can be found by several approaches.
A list of the sequences can be found in Additional file 6. Bacterial strains and/or genomic DNA from bacterial strains were purchased from the American Type Culture Collection (Manassas, VA, USA).
However, gene sequences can be used to reconstruct the bacterial phylogeny, and these studies indicate that bacteria diverged first from the archaeal/eukaryotic lineage.
Bacterial genomic organization is thought to be shaped by selection; therefore, the distribution of BOX-elements' sequencan can be indicative of the structure and evolution of the bacterial genome [ 21, 24, 25].
With the ligase detection reaction (LDR), sequences can be differentiated by just one polymorphism and closely related bacterial species with high sequence similarity can be discriminated.
In UniProt, 327 bacterial proteins are annotated with this EC number, including two SwissProt entries, but no eukaryotic or archaeal sequences can be found.
Currently, a bacterial genome sequence can be obtained within a few days for less than US$500 [ 6], and more than 38,000 genome sequences are available in public databases [ 7].
More suggestions(22)
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