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Bacterial groups such as Cyanobacteria, Proteobacteria, Actinobacteria, Bacteroidetes and Firmicutes were identified.
Common coal-associated bacterial groups such as δ- and γ-Proteobacteria, Spirochaetes and Firmicutes were prevalent in different microcosms, though the presence of specific bacteria was not correlated with methane production.
Specific bacterial groups such as Amaricoccus or Methylocapsa showed significantly higher abundances in beech or spruce forest soils.
Sequencing of a single gene already provides good identification confidence, given that no case of strain misplacement was found in the seven individual gene phylogenies, in contrast to other bacterial groups such as genera Streptococcus and Neisseria (e.g., [32]).
Less frequently, other bacterial groups, such as enterobacteria, corynebacteria or mycobacteria, may also be involved [ 2].
Relevant exceptions were early differentiated bacterial groups such as Aquificales, Thermotogales and the Thermus/Deinococcus group.
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Future studies looking at the mechanisms of bacterial persistence in high risk groups such as Indigenous Australians would be important in understanding these disease processes and to design more effective treatment and prevention.
These protein-pairs can be used to derive improved annotations, e.g. by integrating datasets for specific functional groups such as DNA metabolism (Figure 4) or bacterial motility [14].
On the genome level, bacterial genes have long been known to be organized in functional groups such as operons or as co-conserved genomic islands [20].
The first results suggest a unique BSC bacterial community at each site and this apparently holds true also for the other organism groups such as lichens and cyanobacteria.
Gravel biofilm as well as influent and effluent water samples of these systems were taken in order to detect the presence of bacterial indicators such as total coliforms (TC), Escherichia coli, fecal enterococci (FE), Clostridium perfringens, and other microbial groups such as Pseudomonas and Aeromonas.
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