Sentence examples for bacterial genome databases from inspiring English sources
The methods require profile HMMs constructed from queries (PDC/PAS domain sequences) as well as from protein sequences included in the bacterial genome databases.
Hence, the aim of this study was to identify a thermostable oxidase with the desirable biocatalytic properties of AldO, by searching bacterial genome databases.
From public genome databases (NCBI and Sanger Institute's bacterial genome databases), 83 Salmonella enterica genomes available at the time (April , 2011 were downloaded.
Taxonomic analysis requires comparison of conserved genome stretches, and therefore total DNA extracted from environmental microbiota is mostly PCR-amplified prior to cloning into the appropriate vectors, resulting in gene-specific metagenomic libraries (most frequently 16S-ribosomal DNA libraries) that are easily analyzed using bacterial genome databases and tools.
Summary: As the genome sequences of multiple strains of a given bacterial species are obtained, more generalized bacterial genome databases may be complemented by databases that are focused on providing more information geared for a distinct bacterial phylogenetic group and its associated research community.
The prompt oxidation of the S-type phenolic compounds (due to the presence of two methoxyl substituents in the aromatic ring) make feasible the use of the new HTS assays for directed evolution studies of LRPLs or other phenoloxidases depicted in bacterial genome databases [ 35].
Browsing the entire bacterial genome database led to the identification of 45 homologs from thermophilic bacteria distributed mainly among Chloroflexi, Deinococcus Thermus and Firmicutes.
BLAST algorithm was used to search for sequences homologous with sco7700 and sco7701 in the bacterial genome database of NCBI (www.blast.ncbi.nlm.nih.gov/Blast.cgi).nih.gov/Blast.cgi
No relatives were found in NCBI bacterial genome database however, the best blastp results of predicted genes for 52B7 insert showed that it is probably issued from a Bacteroides genus member (98.5% of predicted genes coverage), the most closely related cultivated strain being B. vulgatus ATCC 8482 with 42% of predicted genes coverage (Table S3 and Table S4).
