Sentence examples for bacterial database from inspiring English sources

Proteins were identified against the B. pumilus entries from the RefSeq protein database available at NCBI, which was appended to an existing bacterial database.

For protein identification, the tandem mass spectra were searched against the NCBI bacterial database using an in-house Mascot search engine.

BLASTn comparisons to the curated bacterial database revealed diverse sequences with greater than 95% similarity to bacteria from three phyla: Bacteriodetes, Firmicutes, and Proteobacteria.

Annotation with MetaCV using a bacterial database annotated 2% of the total reads.

Using an e-value of 0.1 as a cutoff, >400 proteins were identified in the bacterial database, compared with only 1.25 in the random sequence database.

Obtained sequences were subject to a BLAST search against the Integrated Database Network System Smartgene Inc , Raleigh NC) bacterial database to obtain a specific species.

Specificity and sensitivity was evaluated against available bacterial databases (BlastN, GenBank).

Several other similar bacterial databases are accessible at URL. Table 1 presents the list of microbial databases that are available at the Bioinfo server of the University of Hong Kong.

Comparison of single reads and contigs with known genomic and taxonomic data was performed by using dedicated specialized viral, bacterial, and generalist databases created and maintained at the Institut Pasteur (GenBank viral and bacterial databases).

For detecting the origins of human protein domains in archaea or bacteria, we created PSSMs against the eukaryota node to search against archaeal and bacterial databases.

While these generalized databases are valuable resources, more phyla-specific databases are also being developed to address the needs of specific research communities, including providing additional resources not available from the more generalized bacterial databases.