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The spread of Ralstonia wilt in tomato plants previously inoculated with the different resident bacterial communities was tested in a 42 days long greenhouse experiment (Supplementary Fig. 1).
Net relatedness index (NRI) of the bacterial communities was calculated based on mean phylogenetic distance [43, 44], using a null model of random community phylogenetic relationships (picante package ; 999 runs, not abundance weighted).
For β-diversity analysis, dissimilarity of bacterial communities was determined using cluster analysis based on Bray Curtis dissimilarity and principal coordinate analysis (PCoA) on unweighted and weighted UniFrac distances among all samples.
An assessment of this model for bacterial communities was recently performed using DGGE by Woodcock et al [29].
Abundance of some potential corrosive microorganisms and pathogens in genus level in different bacterial communities was listed in Table 3.
Relative abundance of the bacterial communities was calculated by taking the (depth of coverage × 100 Mb/number of covered bases).
Similar(47)
Results indicated that bacterial communities were different between fractions.
Bacterial communities were dissimilar between winter and other seasons (ANOSIM, R = 0.24, P = 0.001).
Fuhrman, J. A. et al. Annually reoccurring bacterial communities are predictable from ocean conditions.
The taxonomic diversities of bacterial communities were calculated with the vegan package.
The bacterial communities were maintained by a core of OTUs that persisted longitudinally and monthly.
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