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The authors classified almost 20% of these organisms as saprophytic bacteria, based on the presence of at least one cellulase and three or more hemicellulases or pectinases.
The basic idea behind the method was to identify groups of proteins (protein families) that are preferentially present in pathogenic organisms (or non-pathogenic ones) (see Fig. 1), and to separate virulent from commensal bacteria, based on the presence or absence of these features.
We also compared the presence of various bacteria based on the subjects' sex and age.
It shows the inhibition of the bacteria based on the antimicrobial activity of the organic solvent used (DMSO).
Primers and probes were designed for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia and total bacteria based on the nucleotide sequences of the respective 16S ribosomal RNA genes.
Among them, phylotypes affiliated with representatives largely or recently reported as oleaginous bacteria, as well as with others considered as possible lipid-accumulating bacteria based on the analysis of their annotated genomes.
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The complexity of the electron transport chain is another important element in the ability of bacteria to grow under a variety of environmental conditions, determining the metabolic flexibility of the bacterium based on the variety of electron donors and acceptors that can be used to support growth [ 38].
As shown in Table 1, Bacteria have two SMR homologues per bacterium based on the overall average but the determination of which SMR subclass member participates in this average is difficult to identify since SMR sequences distributed more or less equally within all three SMR subclasses.
The qRT-PCR product for Wbm0693 was 16-64× 16-64×bundant across all five stages than two hypothetical proteins (Wbmore9 abundant783) thacross present allnuwts but only expected to be transcribed by the bacteria based on SNPs in the transcriptomics sequence.
We selected 2024 ORFs for inclusion on a DNA microarray based upon one or more of the following criteria: i) Similarity to known virulence factors from other bacteria based on visual examination of the BLASTP analysis of the A. salmonicida genome.
The objective of this experiment was to compare the culturable intestinal microbiota of cultured triploid and diploid juvenile Atlantic salmon (Salmo salar) for differences in the microbial community and the antibacterial resistance profiles of the bacteria based on primary traditional bacterial culturing.
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