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For analysis, Spot density and individual background were analyzed using Scanalyse (http://rana.lbl.gov/EisenSoftware.htm).htm
Data, obtained with the six different grey discs and the control disc (of the same Kingfisher Blue color as the background), were analyzed using the method described above.
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Variation of the background was analyzed using RDF formalism.
All expression levels were analyzed using background subtraction, normalization and summarizing probe sets.
The fluorescence intensity of the last frame before bleaching was defined as maximum and normalized to 1. Background fluorescence was subtracted and data were analyzed using SigmaPlot 11.0 and Microsoft Excel 2000.
The sociodemographic and background information regarding self-harm risk were analyzed using the SPSS 16.0.
Two single-insert locus K-TTG1 lines in the AtGL3+ B. napus background (K-5-8 and K-6-3) were analyzed using a Genome WalkerTM Universal Kit (Clontech) with separate DraI and EcoRV digestions to develop two GW libraries per line.
Blood samples were taken in trace metal-free tubes that contained EDTA, and blood lead levels were analyzed using Zeeman background-corrected flameless atomic absorption spectroscopy (ESA Laboratories, Inc., Chelmsford, MA) with graphite furnace.
Core peaks were analyzed using a linear background, except for the S 2p core peak for which a non-linear Shirley-type background was applied [23].
All background data in the patients with RA were analyzed using Student's t-test.
Background subtracted absorbance readings for each strain were analyzed using an automated program called GCAT (available for download at http://www.glbrc.org/gcat-vm/) that uses nonlinear regression using the Richards equation [ 35] or a logistic function [ 36], to report individual specific growth rates (T. Sato and Y. Bukhman, manuscript submitted).
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