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The fluorescent signal associated with the probes and local background was extracted using GenePix Pro (version 6.0, Molecular Devices, Union City, CA).
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In the preprocessing module, each scene that has an approximate background is extracted using the classification algorithm.
In [3], a region of interest (ROI) was extracted using statistical background modeling and extraction of foreground using background subtraction.
The array images were analyzed and data was extracted using Agilent's Feature Extraction (FE) Software version 8.1, providing dye normalization (Linear Lowess) and background substraction.
Total RNA was extracted using SV Total RNA Isolation System (Promega).
Total RNA was extracted using Trizol (Invitrogen).
The microarray signal was extracted using GenePix.
DNA was extracted using a modified CTAB protocol38,39.
Total RNA was extracted using TRIzol method.
Total RNA was extracted using RNAzolB.
DNA was extracted using established protocols.
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