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The identification and quantification of the hybridization signals, as well as subtraction of local background values, were performed using Phoretix™ software (Nonlinear Dynamics, Newcastle upon Tyne, UK).
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Probe-set summary and background correction of expression values were performed by using the RMA algorithm (ArrayAssist ExonRMA), and chip-to-chip variation was corrected by using quantile normalization.
Background correction, normalization and averaging of expression values were performed with the Robust Multi-array Average (RMA) algorithm [ 38].
Using the Singh et al.[ 30] raw data, background correction, normalization and averaging of expression values were performed with the robust multi-array average (RMA) algorithm.
RMA (Robust Multi Chip Analysis) background correction of raw microarray data and normalization of expression values were performed using Partek Genomic Suite Software (Partek).
Probe-set summarization and background correction of expression values was performed by using the RMA algorithm (ArrayAssist ExonRMA), and chip-to-chip variation was corrected by using quantile normalization.
Background correction and normalization of the expression values was performed using the GC Robust Multi-array Average (GCRMA) algorithm [ 51].
No imputation of missing values was performed.
Assays were done in triplicate, and background values were subtracted.
Background values were not subtracted.
Background values were subtracted from the measured intensity values.
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