Exact(1)
On the other hand, the RegionMiner tool of the Genomatix suite (Genomatix Software GmbH, Munich, Germany) identified the most over-represented motifs, based on the background of occurrences of the transcription factor binding sites (TFBSs) within the whole sequence of the rat genome (rn4; NCBI build 4); we compared these to the Pax8 binding regions identified by MACS.
Similar(59)
Although the background levels of occurrences, and thus the PDF values, are higher for the case of ICMEs than for HSS/CIRs; the range of probabilities is larger for the latter.
As we have already discussed in the 'Cumulative probability distribution functions' section, the SPE analysis keyed by the HSS/CIR arrivals resulted in lower background levels of occurrences and probabilities (before epoch day 0), which is partly because of large contribution from years of solar minimum when HSSs regularly occur, while ICMEs are mostly absent.
My questions are: a) Can one estimate the background probability of occurrence of the motifs tested?
The theoretical background for occurrence of multimodal size distributions during continuous cooling is discussed.
As we already noted for QI and Kp indices, the background average levels of occurrences are higher for the case of ICMEs than for HSS/CIRs.
Specifically, there is a need for estimates of the background occurrence of events of interest and for ways to identify potential confounders for safety monitoring or comparative effectiveness studies.
For the materialization of the known biological background that occurrences of TFs in sample of enhancers are not mutually exclusive, the repeated occurrence of a TF is determined by finding the individual probability of the occurrence of a TF (P TF) i in a sample).
We estimate the initial probability of leaving the background state by the number of occurrences of the initialising L-mer divided by the number of bases in the sequences.
With respect to the yellow-to-blue color scale, the lightest and brightest yellow, which tends to blend with the white background, encodes the lowest percentage of occurrences of the signified nucleotide at this position.
The integrated model construction was presented via the case study of the Tihany Peninsula, Hungary, with the aims of understanding the background and occurrence of groundwater-related environmental phenomena, such as wetlands, surface water groundwater interaction, slope instability, and revealing the potential effect of anthropogenic activity and climate change.
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