Sentence examples for background frequency of the from inspiring English sources

For each observed nucleotide in the sliding-window, we divided the corresponding frequency of that nucleotide in the motif by the background frequency of the same nucleotide in all intron sequences.

There is a possibility that this enrichment could be driven by the high background frequency of the embedded SUMO motif.

The relationship between the background frequency of the events and the capability of each system to detect signals was also investigated.

Likewise, R is the vector of the frequency ratios of weighted frequency for each amino acid over the background frequency of the amino acid.

Comparing with the previous models that only employ microarray data, the proposed model can bridge the gap between the relative background frequency of the observed nucleotide and the gene's transcription rate.

The value of each matrix element was calculated according to the following formula: where n is the raw count from the corresponding position in the PFM, N is the the number of observations (sum of each position/column in the PFM), and are pseudocounts and p(b) is the background frequency of the corresponding nucleotide.

We did that by calculating, for each keyword/triplet in each of the 21 clusters, the p-value of its frequency within that cluster, taking into account the background frequency of that keyword/triplet.

Figure 3b compares the fraction of each amino acid within the spatial neighbors of SCRs and non-SCRs where fraction of each amino acid is normalized by the overall background frequency of that particular residue.

At time 0 10 there is a 'dropout' in the background frequencies of the field potential that corresponds to the reduction in entropy prior to seizure onset (at 0 50).

In brief, the dinucleotide relative abundance values ρXY * are defined as the frequency of the dinucleotide XY divided by the product of the background frequencies of the individual nucleotides in the combined sense and reverse complement sequence (ρ* XY = fXY/(fX * fY)).

The two models θM and θB incorporate the frequencies in the position-specific probability matrix of the motif, M, the background frequencies of the residues, B, different substitution rates for the two models RM and RB, respectively, and an evolutionary model for calculating the substitution probabilities.