Sentence examples for background branch from inspiring English sources

Finally, class 2 b has ω = 1 on the background branch and ω ≥ 1 on the foreground branch.

Class 2 a has ω < 1 on the background branch and ω ≥ 1 on the foreground branch.

We last used the 3) two-ratio model, which assumed one ω ratio for the foreground branch and another for the background branch.

Model A requires branches in the tree to belong to either foreground or background branch category, where only foreground lineages are allowed to have experienced positive selection (ω > 0).

Using PAML software, the likelihood ratio test was applied to examine the following two hypotheses: (1) the K A / K S ratio was significantly higher in the branch of interest than in the background branch (tests B and D in [ 17]) and (2) positive selection acted on the branch of interest (improved branch site model; test 2 in [ 18]).

In Figure 2 each branch of the tree is corresponding to one of the segments; the background (branch 1), right outside the border (branch 2), right inside the border including border (branch 3) and the lesion (inside the border, branch 4), respectively.

Comparisons between background branches and foreground branch es) at the base of lineages or within whole clades were conducted to test whether the pattern of selection on these branches was significantly distinct from the rest of the tree.

Using the branch-specific model the Ka/Ks ratio is estimated for the foreground branch es) and an analogous ratio is estimated for the background branches.

They depict two solitary sticklike figures in bas-relief, a woman sitting against a tree on the right and a man standing far away on the left, facing each other across a barren valley, its dark, stormy background branches evoking William Blake's "Marriage of Heaven and Hell".

Unlike codeml, fitmodel does not specify foreground and background branches.

We treated branch B as the foreground branch and all other branches in the phylogeny as background branches (Figure 2A).