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The algorithm uses a sliding window method to determine if a query sequence from an individual matches sequences in a background alignment of viral sequences derived from that individual and his partner.
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Notably, the residues identified by the BPPS procedure are highly conserved in the ErbB family (foreground alignment) and strikingly different in receptor tyrosine kinases outside of the ErbB family (background alignment) (Figure 1).
A representative example of double labelling from the fin bud and cerebellum in the isl1-GFP background showing the alignment of pectoral motoneurons with identified hindbrain neuronal subgroups.
She participated in the literature search for background information, sequence and alignment of the paper.
For these lines, both the best overall match and the best secondary match were to one or both of the reported intercross background with alignment scores of 0.7 or greater (OB1xB3 had a slightly lower alignment score due to known contamination by Chinese Hamster Ovary feeder cells, personal communication from Rosann Farber, Additional file 1).
The initial ancestral reconstruction assumed the background amino acid frequencies implicit in the LG matrix, while the alternative reconstruction estimated background frequencies from the sequence alignment of the alternative dataset.
This creates a dark fixation dot against an illuminated background which was used for alignment of the subject.
Intrinsic anisotropy, caused by alignment of anisotropic mineral crystals (such as clays and micas), is included using an anisotropic background elasticity ( S_{ijkl}^{0} ).
This approach helps identify sequences whose conservation is rare to occur in the substitution background of each alignment.
It was an alignment of the stars.
One is the alignment of planets.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com