Sentence examples for background adjustment normalization and from inspiring English sources
The MAS 5.0 algorithm was used for background adjustment, normalization, and probe-level summarization of microarray data [36].
The robust multiarray analysis algorithm (RMA, GeneSpring; Agilent Technologies) was applied to the data for background adjustment, normalization, and log2 transformation of perfect match values [65].
Although this stage of the analysis pipeline is often simply referred to as normalization, it usually involves three separate steps: background adjustment, normalization, and summarization.
Next MAS5.0 was used to perform additional pre-processing for background adjustment, normalization and summarization.
Background adjustment, normalization and summarization of the microarray data was done using the GCRMA method [ 34].
We used the LIMMA package to perform the background adjustment, normalization and summarization [ 58].
The data preprocessing steps, background-adjustment, normalization and computation of GC-RMA gene expression measures were performed according to Wu et al. (Wu Z; Irizarry RA; Gentleman R; Martinez-Murillo F; Spencer F (2004): A Model-Based Background Adjustment for Oligonucleotide Expression Arrays, Johns Hopkins University, Dept. of Biostatistics Working Papers, Working Paper 1).
Subsequent background adjustment, normalization of the raw data and estimation of probe sets signal intensities were done using GC-RMA method [ 74].
RMA Express was used for array normalization of each experiment [ 99]. Background adjustment, quantile normalization, and median polish were applied.
GCRMA uses probe affinity data including perfect match, mismatch probes and sequence information to perform background adjustment, quantile normalization, and median-polish summarization.
To compare the respective glomerular and tubulointerstitial gene expression profiles we performed background adjustment, quantile normalization and probeset summarization using Robust Multichip Analysis RMAA) using RMAexpress version 0.3 [67] with settings from previous studies [65].
