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Both backbone to backbone and side chain to side chain hydrogen bonds are lost, and the β-sheets are moving away from each other.
Non-native H-bonds refer to all others, including those between backbone to backbone, backbone to side-chain, and side-chain to side-chain.
(57) Their larger values appear to be associated with hydrogen bonds near the ends of short β-strands: our results relate to very stable backbone to backbone hydrogen bonds within an 8-stranded β-sheet and well removed from the binding ligands.
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For the backbone-to-backbone links the convex energy model with exponential constraint was always used.
In this first simulation, the convex model is used for all links, with the additional exponential constraint force for the backbone-to-backbone links.
In our simulations, backbone-to-backbone links, of critical importance in the network architecture, are modeled using the convex model with exponential constraint, while the backbone-to-terminal links are modeled using the Morse potential.
Also, FSO links with 2 mrad half-beam divergence [9] are used for the backbone-to-backbone links and RF links with rad half-beam divergence for the backbone-to-terminal links.
At the NAPs, packet traffic may jump from one NSP's backbone to another NSP's backbone.
The Pro residue is a very unique AA; it is a cyclic AA, and its side chain cyclizes back to the amide on the backbone, which restricts the confirmation of its backbone to a small range of backbone angles.
A triazine linker has also been used as part of a homopolymer backbone to yield photoinduced backbone fragmentation.
Density for the close approach of the CarD peptide backbone to the −14 t) DNA phosphate backbone and for CarD-W86 are clearly resolved.
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CEO of Professional Science Editing for Scientists @ prosciediting.com