Sentence examples for backbone modeling from inspiring English sources

Further analysis of the inferred Bap protein with transmembrane prediction [ 38, 39] and amino acid backbone modeling (using 3D position specific scoring matrix fold recognition server, [ 40]) indicated a two pass transmembrane protein structure.

This step is then followed by all-atom refinement of the peptide-protein conformation with fine backbone modeling and side-chain placement, based on the Rosetta FlexPepDock refinement protocol [26].

Thus, in our tool, an ensemble of five structures is generated using a flexible backbone modeling method, RosettaBackrub [24, 36], for both the original and the mutant kinase structures.

Greater accuracy of the flexible backbone model results from both increases and decreases in side-chain flexibility relative to the fixed-backbone model.

Results are obtained for a segmented, flexible backbone model of a typical naval frigate.

We designed 135,000 artificial sequences for a repertoire of backbone models representing all theoretically possible axial rotation states.

As such, this study focuses on using a multivariate data analysis techniques, to develop a RMSW load-displacement (backbone) model.

A backbone model of a 10-subunit yeast RNA polymerase II has been derived from x-ray diffraction data extending to 3 angstroms resolution.

We show that such a gradient elasticity backbone model can be combined with any standard nonlinear constitutive driver to render a regularised model for softening inelasticity.

Aided by the 3.96 Å density map of CI, we were able to accurately assign all the 14 core subunits together with 20 supernumerary subunits, and build 17 additional backbone models into the unoccupied density.

A flexible backbone model was designed with five cut-outs on the top side of the aluminum beam to realize approximately torsional stiffness as well as vertical and horizontal bending stiffness.