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Epineural and epipleural tendons are interpreted to minimize lateral backbone displacement during high body curvatures.
The docking method was performed using a two-step process of rigid-body Monte Carlo searching and parallel optimization of the backbone displacement and side-chain conformations.
The RosettaDock methodology uses a two-step process of rigid-body Monte Carlo searching and parallel optimization of the backbone displacement and side-chain conformations.
No backrub motion was necessary for Leu98 due to the different type of backbone displacement (Fraser et al., 2009).
In order to simplify our analysis, we choose to limit our study to cases where the average backbone displacement of the binding site is below 2.50 Å (RMSD).
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Deoxy-Mb exhibits several structural differences to Mb-CO, in particular heme-doming due to the out-of-plane movement of the heme iron, protein backbone displacements of helices B, C and E and, to a lesser extent, of helices F and G.
As such, this study focuses on using a multivariate data analysis techniques, to develop a RMSW load-displacement (backbone) model.
Two analytical models for predicting the force-displacement backbone curves of the exterior shear keys with sliding shear failure and sliding friction failure were developed, respectively.
It is also deposited with a single backbone, but the displacements of the side-chain atoms as seen in the electron density and that density's anisotropy perpendicular to the chain's direction reveal that a backrub better models this residue.
Surfactant-like monomers linked to the FPS backbone improve the microscopic displacement efficiency of water-soluble polymer by pulling them towards the oil water interface and creating an oil water emulsion.
For these reasons, visual inspection of the maps and manual building is currently essential for alternative backbone conformations with moderate displacements, as observed in residues 79 83.
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